Bibliography and Relation Register
got-v1-part-1-support-bibliography-and-relation-register | Support document | Issue 1
https://goto-go.com/machine/documents/got-v1-part-1-support-bibliography-and-relation-register/

Part Bibliography and Relation Register

Part 1: On the Origin of Life | Bibliographic consolidation and relation-control support document | source-locked | Issue 1


TABLE got-v1-part-1-support-bibliography-and-relation-register-t01

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r01
Control field: Document ID
Value: OOL-P1-SD04-BIBLIOGRAPHY

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r02
Control field: Version / issue
Value: Issue 1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r03
Control field: Date
Value: 2026-09-22

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r04
Control field: Status
Value: Final controlled Part-level bibliography and relation-control support document for Part 1 Issue 1, source-locked to the finalised GOT-V1-1-1 / GOT-V1-1-2 / GOT-V1-1-3 papers, their fixed literal heading locators, and final SD-01-SD-03 controls. Secondary to canonical papers.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r05
Control field: Supersedes
Value: Earlier Issue 1 source-lock states, including the FD15 / v17 / v14 and FD15 / v18 / v15 locks, plus the numbering-aligned working state. This final Issue 1 release locks the register to the final paper identities, fixed literal heading locators, and final SD-01-SD-03 controls.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r06
Control field: Function
Value: Consolidates the admitted Paper 1-3 bibliographies into one deduplicated Part bibliography while preserving paper-local relation status, cross-paper differences, hold/exclusion branch-memory, adjacency residual, and handoff to the later Series Master Bibliography.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r07
Control field: Canonical rule
Value: Paper bibliographies and local endnotes remain authoritative for paper-level scholarly use. Paper 1 compact relation metadata now records the completed targeted audit upgrade; Paper 2 and Paper 3 coded metadata remains historical audit provenance revalidated by the current posture/delta checks where the paper relation and locator remain unchanged. This document does not create new technical warrant or Indexed Inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r08
Control field: Protocol rule
Value: GOT-SD-BIB-01 governs E/F/P/C/A/I classification, relation tags, inheritance levels, hold/exclusion discipline, residual, and upward consolidation.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r09
Control field: Source-lock rule
Value: Use only the final Issue 1 primary papers GOT-V1-1-1, GOT-V1-1-2, and GOT-V1-1-3; GOT-SD-BIB-01; and the final Part 1 SD-01-SD-03 controls as the active conceptual/source lock. Primary-paper relation anchors must use the current literal heading locator map; cited locators omit the terminal display full stop. The v17/v14 Paper 2/Paper 3 audit records remain historical provenance for coded metadata; the completed Paper 1 targeted audit and current Paper 2/Paper 3 posture checks are control-state updates only and do not import downstream concepts. Superseded paper revisions and prior working drafts are excluded.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t01-r10
Control field: Template rule
Value: Part 1 SD-01-SD-03 provide final support-stack control and release discipline. Bibliographic identity and paper-local relation statements are re-verified against the final GOT-V1-1-1 / GOT-V1-1-2 / GOT-V1-1-3 Issue 1 files and their fixed literal heading locators. The final release records the Paper 1 targeted-audit outcome and the Paper 2/Paper 3 no-change delta checks without promoting or strengthening relations by aggregation.



1. Purpose and governing rules

This document is the controlled Part 1 consolidation layer required by the bibliographic protocol. It deduplicates the bibliographic record across the three papers while keeping the scholarly relation local to the paper in which that relation was earned. It is not a substitute bibliography for any paper, and it does not move citation authority upward merely because a source appears more than once.

The governing distinction is between bibliographic identity and relational use. One publication may appear once in the Part bibliography and still carry different relations in different papers. The relation register therefore preserves paper-local comparator, evidence, dependency, adjacency, inheritance, and hold status rather than assigning a single Part-wide meaning to the source.

No relation is strengthened by aggregation. Repetition across papers is not evidence of Indexed Inheritance, priority, correctness, or framework-level dependence. Promotion remains subject to deliberate review under GOT-SD-BIB-01; local demotion or correction may be made whenever the source record requires it.

The local endnotes and bibliography of each paper remain the reader-facing scholarly apparatus. This Part document is control infrastructure: it supports deduplication, cross-paper consistency, branch-memory, later Series consolidation, and the prevention of authority transfer by accumulation.

0.1 Source-lock register


TABLE got-v1-part-1-support-bibliography-and-relation-register-t02

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r01
Seq.: P1
Current consolidation input: GOT-V1-1-1 - On the Origin of Life - Issue 1.docx
Verification / status: Final Issue 1 source-locked bibliography-integrated Paper 1 input; sha16 b46a62c660223454. The file is byte-identical to the approved FD16 source-locked copy. FD16 preserves the FD15 canonical technical body and adds the approved Lizier et al. (2007) and Kolchinsky & Wolpert (2018) scholarly apparatus. The completed targeted audit supplies coded relation and hold/exclusion branch-memory for Paper 1. Heading locators are the final fixed literal locators.
Permitted use: Published bibliography and local endnote relations; current Paper 1 audit-control metadata.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r02
Seq.: P2
Current consolidation input: GOT-V1-1-2 - The Identification of Life - Issue 1.docx
Verification / status: Final Issue 1 source-locked bibliography-integrated Paper 2 input; sha16 0f1f564c3786f208. The file is byte-identical to the approved v18 source-locked copy. Published bibliography and local endnote relations were re-verified; the 2026-08-12 posture/delta check found no reader-facing bibliography or technical change. Relation anchors cite the final fixed literal heading locators.
Permitted use: Published bibliography, local endnotes, and paper-local relation anchors.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r03
Seq.: P3
Current consolidation input: GOT-V1-1-3 - The Life Attribution Procedure - Issue 1.docx
Verification / status: Final Issue 1 source-locked bibliography-integrated Paper 3 input; sha16 6c6d2b60203198e8. The file is byte-identical to the approved v15 source-locked copy. Published bibliography and local endnote relations were re-verified; the 2026-08-12 posture/delta check found no reader-facing bibliography or technical change. Relation anchors cite the final fixed literal heading locators.
Permitted use: Published bibliography, local endnotes, and paper-local relation anchors.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r04
Seq.: P2 audit
Current consolidation input: 2. The Identification of Life - Bibliographic and Adjacency Audit Record - Issue 1 - v17 Aligned.docx
Verification / status: Historical working non-canonical audit record aligned to canonical v17. Retained only as provenance for coded Paper 2 maturity/class/tag/inheritance metadata already embodied in this register; not a source lock for v18.
Permitted use: Historical classification, hold/exclusion, and residual provenance where the current v18 paper relation and locator remain unchanged.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r05
Seq.: P3 audit
Current consolidation input: 3. The Life Attribution Procedure - Bibliographic and Adjacency Audit Record - Issue 1 - v14 Aligned.docx
Verification / status: Historical working non-canonical audit record aligned to canonical v14. Retained only as provenance for coded Paper 3 maturity/class/tag/inheritance metadata already embodied in this register; not a source lock for v15.
Permitted use: Historical classification, hold/exclusion, and residual provenance where the current v15 paper relation and locator remain unchanged.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r06
Seq.: Protocol
Current consolidation input: GOT - Bibliographic Identification Classification and Adjacency Discovery Protocol - Issue 1.docx
Verification / status: GOT-SD-BIB-01 | Issue 1 | 2026-08-07.
Permitted use: Bibliographic classes, relation tags, inheritance levels, upward consolidation, hold/exclusion, residual, and anti-drift rules.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r07
Seq.: P1 SD-01
Current consolidation input: Concept Compression Map - Issue 1.docx
Verification / status: Final Issue 1 source-lock control; sha16 a256c5229849f993.
Permitted use: Part structure and source-discipline control reference.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r08
Seq.: P1 SD-02
Current consolidation input: Glossary - Issue 1.docx
Verification / status: Final Issue 1 controlled vocabulary reference; sha16 e97712ced4e2b095.
Permitted use: Vocabulary and canonical-home control reference.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t02-r09
Seq.: P1 SD-03
Current consolidation input: Guardrail and Failure-Mode Register - Issue 1.docx
Verification / status: Final Issue 1 failure-control reference; sha16 794360cc1ff16519.
Permitted use: Failure-control and release-discipline reference.



Excluded source class: superseded Part 1 paper revisions and bibliography-integration outputs, including FD15; historical v17/v14 Paper 2/Paper 3 audit records except as provenance for coded metadata revalidated in the current papers; unadmitted external sources except where explicitly retained as hold/exclusion branch-memory; prior generated answers; and any external publication not admitted or held by the completed paper-level audit state. This Part consolidation does not run a new discovery sweep.

2. Consolidation architecture


TABLE got-v1-part-1-support-bibliography-and-relation-register-t03

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r01
Layer: Paper bibliography
Function: Reader-facing local scholarly apparatus.
Control rule: Full reference list plus local endnotes. The paper decides why a source is present.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r02
Layer: Part bibliography
Function: Deduplicated bibliographic identity across Papers 1-3.
Control rule: One bibliographic record per publication, with paper-occurrence markers. It does not flatten local relations.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r03
Layer: Relation register
Function: Preserves the source-to-paper relation that was actually earned.
Control rule: Paper-local class / tag / inheritance metadata where established by a completed audit. Current Paper 1 targeted-audit metadata and revalidated Paper 2/Paper 3 historical codes remain paper-local; no Part-level strengthening is permitted.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r04
Layer: Cross-paper controls
Function: Expose material differences where the same publication is used more than once.
Control rule: Prevents repeated citation from becoming authority transfer or silent conceptual inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r05
Layer: Hold / exclusion branch-memory
Function: Preserves material candidates not admitted to a local paper bibliography.
Control rule: Stops excluded or scoped material being rediscovered without context and prevents provenance duplication across papers.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r06
Layer: Part residual
Function: Carries limits of the completed paper-level sweeps upward.
Control rule: No claim of exhaustive prior-art discovery; unsearched, inaccessible, or unrecognised adjacency remains residual.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t03-r07
Layer: Series handoff
Function: Feeds the later Series Master Bibliography and dependency/provenance controls.
Control rule: Deduplicate bibliographic identity again at Series level while retaining all paper- and Part-local relation records.



Upward consolidation therefore proceeds as: individual paper bibliography -> Part bibliography -> Series Master Bibliography. At each step the bibliographic record may be deduplicated; the indexed relation may not be collapsed merely for convenience.

3. Part 1 deduplicated publication bibliography

The following forty-three entries are the union of the three current paper bibliographies after bibliographic deduplication. The paper-occurrence field is descriptive only: it identifies where the publication is locally admitted. It does not assign a Part-level class or imply that a repeated publication carries the same relation in each paper.


TABLE got-v1-part-1-support-bibliography-and-relation-register-t04

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r01
Part ID: PB01
Deduplicated bibliographic record: Bartlett, S. J. (2024). Causal leverage density: A general approach to semantic information. arXiv:2407.07335. https://doi.org/10.48550/arXiv.2407.07335
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r02
Part ID: PB02
Deduplicated bibliographic record: Bernat, J. L., Culver, C. M., & Gert, B. (1981). On the definition and criterion of death. Annals of Internal Medicine, 94(3), 389-394. https://doi.org/10.7326/0003-4819-94-3-389
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r03
Part ID: PB03
Deduplicated bibliographic record: Chalmers, D. J. (1996). Does a rock implement every finite-state automaton? Synthese, 108(3), 309-333. https://doi.org/10.1007/BF00413692
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r04
Part ID: PB04
Deduplicated bibliographic record: Cleland, C. E., & Chyba, C. F. (2002). Defining 'life'. Origins of Life and Evolution of the Biosphere, 32(4), 387-393. https://doi.org/10.1023/A:1020503324273
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r05
Part ID: PB05
Deduplicated bibliographic record: Deacon, T. W., Srivastava, A., & Bacigalupi, J. A. (2014). The transition from constraint to regulation at the origin of life. Frontiers in Bioscience (Landmark Edition), 19(6), 945-957. https://doi.org/10.2741/4259
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r06
Part ID: PB06
Deduplicated bibliographic record: Diener, T. O. (1971). Potato spindle tuber "virus": IV. A replicating, low molecular weight RNA. Virology, 45(2), 411-428. https://doi.org/10.1016/0042-6822(71)90342-4
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r07
Part ID: PB07
Deduplicated bibliographic record: Doulcier, G., Takacs, P., & Bourrat, P. (2024). Evolutionary transitions in individuality and life cycle closure. Philosophy of Science, 91(5), 1393-1403. https://doi.org/10.1017/psa.2023.162
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r08
Part ID: PB08
Deduplicated bibliographic record: England, J. L. (2015). Dissipative adaptation in driven self-assembly. Nature Nanotechnology, 10, 919-923. https://doi.org/10.1038/nnano.2015.250
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r09
Part ID: PB09
Deduplicated bibliographic record: Forterre, P. (2011). Manipulation of cellular syntheses and the nature of viruses: The virocell concept. Comptes Rendus Chimie, 14(4), 392-399. https://doi.org/10.1016/j.crci.2010.06.007
Paper(s): P2; P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r10
Part ID: PB10
Deduplicated bibliographic record: Green, J., Hoehler, T., Neveu, M., Domagal-Goldman, S., Scalice, D., & Voytek, M. (2021). Call for a framework for reporting evidence for life beyond Earth. Nature, 598, 575-579. https://doi.org/10.1038/s41586-021-03804-9
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r11
Part ID: PB11
Deduplicated bibliographic record: Hordijk, W., & Steel, M. (2015). Autocatalytic sets and boundaries. Journal of Systems Chemistry, 6, Article 1. https://doi.org/10.1186/s13322-014-0006-2
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r12
Part ID: PB12
Deduplicated bibliographic record: Horsman, C., Stepney, S., Wagner, R. C., & Kendon, V. (2014). When does a physical system compute? Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 470(2169), 20140182. https://doi.org/10.1098/rspa.2014.0182
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r13
Part ID: PB13
Deduplicated bibliographic record: Huh, D., Matthews, B. D., Mammoto, A., Montoya-Zavala, M., Hsin, H. Y., & Ingber, D. E. (2010). Reconstituting organ-level lung functions on a chip. Science, 328(5986), 1662-1668. https://doi.org/10.1126/science.1188302
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r14
Part ID: PB14
Deduplicated bibliographic record: Jeffries, K. M., Hinch, S. G., Donaldson, M. R., Gale, M. K., Burt, J. M., Thompson, L. A., Farrell, A. P., Patterson, D. A., & Miller, K. M. (2011). Temporal changes in blood variables during final maturation and senescence in male sockeye salmon Oncorhynchus nerka: Reduced osmoregulatory ability can predict mortality. Journal of Fish Biology, 79(2), 449-465. https://doi.org/10.1111/j.1095-8649.2011.03042.x
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r15
Part ID: PB42
Deduplicated bibliographic record: Kolchinsky, A., & Wolpert, D. H. (2018). Semantic information, autonomous agency and non-equilibrium statistical physics. Interface Focus, 8(6), 20180041. https://doi.org/10.1098/rsfs.2018.0041
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r16
Part ID: PB15
Deduplicated bibliographic record: Krakauer, D., Bertschinger, N., Olbrich, E., Flack, J. C., & Ay, N. (2020). The information theory of individuality. Theory in Biosciences, 139(2), 209-223. https://doi.org/10.1007/s12064-020-00313-7
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r17
Part ID: PB16
Deduplicated bibliographic record: Landauer, R. (1961). Irreversibility and heat generation in the computing process. IBM Journal of Research and Development, 5(3), 183-191. https://doi.org/10.1147/rd.53.0183
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r18
Part ID: PB17
Deduplicated bibliographic record: Latil, M., Rocheteau, P., Chatre, L., et al. (2012). Skeletal muscle stem cells adopt a dormant cell state post mortem and retain regenerative capacity. Nature Communications, 3, 903. https://doi.org/10.1038/ncomms1890
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r19
Part ID: PB18
Deduplicated bibliographic record: Lennon, J. T., & Jones, S. E. (2011). Microbial seed banks: The ecological and evolutionary implications of dormancy. Nature Reviews Microbiology, 9(2), 119-130. https://doi.org/10.1038/nrmicro2504
Paper(s): P2; P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r20
Part ID: PB43
Deduplicated bibliographic record: Lizier, J. T., Prokopenko, M., & Zomaya, A. Y. (2007). Detecting non-trivial computation in complex dynamics. In F. Almeida e Costa, L. M. Rocha, E. Costa, I. Harvey, & A. Coutinho (Eds.), Advances in artificial life: 9th European Conference, ECAL 2007 (Lecture Notes in Computer Science, Vol. 4648, pp. 895–904). Springer. https://doi.org/10.1007/978-3-540-74913-4_90
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r21
Part ID: PB19
Deduplicated bibliographic record: Merlo, L. M. F., Pepper, J. W., Reid, B. J., & Maley, C. C. (2006). Cancer as an evolutionary and ecological process. Nature Reviews Cancer, 6(12), 924-935. https://doi.org/10.1038/nrc2013
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r22
Part ID: PB20
Deduplicated bibliographic record: Montévil, M., & Mossio, M. (2015). Biological organisation as closure of constraints. Journal of Theoretical Biology, 372, 179-191. https://doi.org/10.1016/j.jtbi.2015.02.029
Paper(s): P1; P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r23
Part ID: PB21
Deduplicated bibliographic record: Moran, N. A., & Sloan, D. B. (2015). The hologenome concept: Helpful or hollow? PLOS Biology, 13(12), e1002311. https://doi.org/10.1371/journal.pbio.1002311
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r24
Part ID: PB22
Deduplicated bibliographic record: Nasralla, D., Coussios, C. C., Mergental, H., et al. (2018). A randomized trial of normothermic preservation in liver transplantation. Nature, 557, 50-56. https://doi.org/10.1038/s41586-018-0047-9
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r25
Part ID: PB23
Deduplicated bibliographic record: Neveu, M., Hays, L. E., Voytek, M. A., New, M. H., & Schulte, M. D. (2018). The Ladder of Life Detection. Astrobiology, 18(11), 1375-1402. https://doi.org/10.1089/ast.2017.1773
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r26
Part ID: PB24
Deduplicated bibliographic record: Parenteau, N., Hoehler, T., Davila, A., Getty, S., Lau, G., Neveu, M., Shkolyar, S., Des Marais, D., Rios, A., Jahnke, L., Bebout, L., Quinn, R., & Pohorille, A. (2025). Life Detection Knowledge Base: Assessment Criteria for Potential Biosignatures. Astrobiology, 25(7), 474-481. https://doi.org/10.1089/ast.2024.0104
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r27
Part ID: PB25
Deduplicated bibliographic record: Parrondo, J. M. R., Horowitz, J. M., & Sagawa, T. (2015). Thermodynamics of information. Nature Physics, 11, 131-139. https://doi.org/10.1038/nphys3230
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r28
Part ID: PB26
Deduplicated bibliographic record: Partridge, E. A., Davey, M. G., Hornick, M. A., et al. (2017). An extra-uterine system to physiologically support the extreme premature lamb. Nature Communications, 8, 15112. https://doi.org/10.1038/ncomms15112
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r29
Part ID: PB27
Deduplicated bibliographic record: Pradeu, T. (2016). Organisms or biological individuals? Combining physiological and evolutionary individuality. Biology & Philosophy, 31(6), 797-817. https://doi.org/10.1007/s10539-016-9551-1
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r30
Part ID: PB28
Deduplicated bibliographic record: Prusiner, S. B. (1982). Novel proteinaceous infectious particles cause scrapie. Science, 216(4542), 136-144. https://doi.org/10.1126/science.6801762
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r31
Part ID: PB29
Deduplicated bibliographic record: Queller, D. C., & Strassmann, J. E. (2009). Beyond society: The evolution of organismality. Philosophical Transactions of the Royal Society B: Biological Sciences, 364(1533), 3143-3155. https://doi.org/10.1098/rstb.2009.0095
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r32
Part ID: PB30
Deduplicated bibliographic record: Rafiei, S. K. S., & Asadi Anar, M. (2026). Membrane information organization at the origin of life: From interfaces to informational bodies. BioSystems, 265, 105830. https://doi.org/10.1016/j.biosystems.2026.105830
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r33
Part ID: PB31
Deduplicated bibliographic record: Roger, A. J., Munoz-Gomez, S. A., & Kamikawa, R. (2017). The Origin and Diversification of Mitochondria. Current Biology, 27(21), R1177-R1192. https://doi.org/10.1016/j.cub.2017.09.015
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r34
Part ID: PB32
Deduplicated bibliographic record: Ruiz-Mirazo, K., Peretó, J., & Moreno, A. (2004). A universal definition of life: Autonomy and open-ended evolution. Origins of Life and Evolution of the Biosphere, 34(3), 323-346. https://doi.org/10.1023/B:ORIG.0000016440.53346.DC
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r35
Part ID: PB33
Deduplicated bibliographic record: Salje, J. (2021). Cells within cells: Rickettsiales and the obligate intracellular bacterial lifestyle. Nature Reviews Microbiology, 19, 375-390. https://doi.org/10.1038/s41579-020-00507-2
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r36
Part ID: PB34
Deduplicated bibliographic record: Seifert, U. (2012). Stochastic thermodynamics, fluctuation theorems and molecular machines. Reports on Progress in Physics, 75(12), 126001. https://doi.org/10.1088/0034-4885/75/12/126001
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r37
Part ID: PB35
Deduplicated bibliographic record: Shannon, C. E. (1948). A mathematical theory of communication. Bell System Technical Journal, 27(3), 379-423; 27(4), 623-656. https://doi.org/10.1002/j.1538-7305.1948.tb01338.x; https://doi.org/10.1002/j.1538-7305.1948.tb00917.x
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r38
Part ID: PB36
Deduplicated bibliographic record: Sharma, A., Czégel, D., Lachmann, M., Kempes, C. P., Walker, S. I., & Cronin, L. (2023). Assembly theory explains and quantifies selection and evolution. Nature, 622, 321-328. https://doi.org/10.1038/s41586-023-06600-9
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r39
Part ID: PB37
Deduplicated bibliographic record: Shewmon, D. A. (2001). The brain and somatic integration: Insights into the standard biological rationale for equating "brain death" with death. The Journal of Medicine and Philosophy, 26(5), 457-478. https://doi.org/10.1076/jmep.26.5.457.3000
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r40
Part ID: PB38
Deduplicated bibliographic record: Suárez, J., & Stencel, A. (2020). A part-dependent account of biological individuality: Why holobionts are individuals and ecosystems simultaneously. Biological Reviews, 95(5), 1308-1324. https://doi.org/10.1111/brv.12610
Paper(s): P2

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r41
Part ID: PB39
Deduplicated bibliographic record: Szostak, J. W., Bartel, D. P., & Luisi, P. L. (2001). Synthesizing life. Nature, 409, 387-390. https://doi.org/10.1038/35053176
Paper(s): P3

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r42
Part ID: PB40
Deduplicated bibliographic record: Varela, F. G., Maturana, H. R., & Uribe, R. (1974). Autopoiesis: The organization of living systems, its characterization and a model. BioSystems, 5(4), 187-196. https://doi.org/10.1016/0303-2647(74)90031-8
Paper(s): P1

RECORD got-v1-part-1-support-bibliography-and-relation-register-t04-r43
Part ID: PB41
Deduplicated bibliographic record: Woodward, J. (2003). Making things happen: A theory of causal explanation. Oxford University Press. https://doi.org/10.1093/0195155270.001.0001
Paper(s): P1



4. Cross-paper relation controls

Three publications occur in more than one Part 1 bibliography. Their duplicate bibliographic identity is consolidated above, but their paper-local relation remains separate. A fourth cross-paper control is recorded for Montévil and Mossio because Paper 3 explicitly holds the Paper 2 organisational-closure family out of its own bibliography to avoid duplicating provenance.


TABLE got-v1-part-1-support-bibliography-and-relation-register-t05

RECORD got-v1-part-1-support-bibliography-and-relation-register-t05-r01
Source / control: PB09 Forterre (2011)
Paper 1 relation: Not locally admitted in the current Paper 1 bibliography.
Paper 2 relation: A3; C / REF / 0. Throughput-identity comparator at heading 5.5, note 4. The free virion / intracellular virocell distinction is close to free-phase / host-completed attribution, but Life-in-Potential is not inherited from the virocell concept.
Paper 3 relation: A3; C / REF / 0. Procedural comparator at headings 5.3 and 5.4, note 4. Supports separation of inert free phase from host-completed intracellular phase; the Paper 3 attribution sequence and classifications remain independent.
Part-level control: One publication; two related but distinct comparator uses. No inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t05-r02
Source / control: PB18 Lennon & Jones (2011)
Paper 1 relation: Not locally admitted in the current Paper 1 bibliography.
Paper 2 relation: E / N-A / 1. heading 5.3, note 3. Empirical support for dormancy as reversible reduced activity; intrinsic resumability remains the Paper 2 attribution criterion.
Paper 3 relation: E / N-A / 1. heading 5.1, note 2. Empirical support for low-activity yet resumable biological states; GOT dormant-Life classification is not inherited from the source.
Part-level control: Same empirical literature supports two local claims. Operational evidence use does not transfer the surrounding framework.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t05-r03
Source / control: PB20 Montévil & Mossio (2015)
Paper 1 relation: Local endnote relation: close organisational neighbour; acknowledged without technical dependence. Closure of constraints does not establish the Paper 1 NTC/IPL burden.
Paper 2 relation: A3; C / OVL / 0. heading 1.6 maintained-interface comparator, note 2. Organisational closure may help mark interacting biological boundaries, but closure alone does not establish Attribution Locus or life-status.
Paper 3 relation: Not admitted. Paper 3 H03 is a scoped X6 hold on the Paper 2 biological-individuality / holobiont / organisational-closure family because Paper 3 inherits attribution architecture and should not duplicate Paper 2 provenance merely because exemplars apply it.
Part-level control: Deduplicate the publication record; preserve P1 and P2 local meanings and the P3 non-duplication boundary.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t05-r04
Source / control: Control consequence
Paper 1 relation: Repeated citation has no upgrading effect.
Paper 2 relation: Paper-local coded relation governs.
Paper 3 relation: Paper-local coded relation or scoped hold governs.
Part-level control: No source is promoted to dependency or Indexed Inheritance by accumulation across Part 1.



5. Paper-local relation index

This index preserves the local scholarly reason for each admitted reference. Paper 1 now records the compact grammar established by the completed targeted audit upgrade against FD16. Paper 2 and Paper 3 retain the compact grammar from their earlier coded audit records where the current posture/delta checks confirm that the relation and locator remain unchanged. No relation is strengthened by Part-level consolidation.


TABLE got-v1-part-1-support-bibliography-and-relation-register-t06

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r01
Part ID: PB01
Paper: P1
Source: Bartlett (2024)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 7
Source-locked relation: Examined methodological adjacency to a possible Baseline Dynamics intervention/readout; does not establish physically supported alphabet, BD adequacy, or IPL localisation.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r02
Part ID: PB03
Paper: P1
Source: Chalmers (1996)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 1
Source-locked relation: Computational-implementation / triviality problem; motivates constraints beyond arbitrary physical-to-computational mapping but does not supply TC/NTC.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r03
Part ID: PB04
Paper: P1
Source: Cleland & Chyba (2002)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 10
Source-locked relation: Theory-level life-definition context; does not establish that the present discriminator succeeds.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r04
Part ID: PB05
Paper: P1
Source: Deacon et al. (2014)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 6
Source-locked relation: Close organisational neighbour; no technical dependence. Constraint organisation alone does not establish NTC/IPL.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r05
Part ID: PB08
Paper: P1
Source: England (2015)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 9
Source-locked relation: Negative comparator: driven dissipative self-assembly may be structured without meeting the IPL-mediated NTC maintenance burden.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r06
Part ID: PB11
Paper: P1
Source: Hordijk & Steel (2015)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 11
Source-locked relation: Autocatalytic-set / boundary architecture as chemistry-to-life candidate scaffold; does not by itself establish the life discriminator.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r07
Part ID: PB12
Paper: P1
Source: Horsman et al. (2014)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 1
Source-locked relation: Computational implementation / triviality problem; does not supply the present TC/NTC discriminator.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r08
Part ID: PB42
Paper: P1
Source: Kolchinsky & Wolpert (2018)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 8
Source-locked relation: Information-maintenance comparator: semantic information is defined through causal necessity for maintaining physical-system viability under counterfactual scrambling. Paper 1 does not inherit semantic-information or viability formalism and retains its own IPL/NTC/BD life threshold.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r09
Part ID: PB16
Paper: P1
Source: Landauer (1961)
Local status / compact grammar: F / DEP / 1
Local anchor: Endnote 4
Source-locked relation: Canonical physical irreversibility result for logically irreversible information operations; grounds physical cost/constraint claim, not NMF layering.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r10
Part ID: PB43
Paper: P1
Source: Lizier et al. (2007)
Local status / compact grammar: A3; P / N-A / 0; secondary C / OVL / 0
Local anchor: Endnote 1
Source-locked relation: Prior technical use of “non-trivial computation” acknowledged for terminology/provenance and comparison. Their distributed information-storage/transfer/modification framework does not supply Paper 1 organisation-mediated, comparator-tested NTC.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r11
Part ID: PB20
Paper: P1
Source: Montévil & Mossio (2015)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: Endnote 6
Source-locked relation: Close organisational neighbour; no technical dependence. Constraint organisation alone does not establish NTC/IPL.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r12
Part ID: PB25
Paper: P1
Source: Parrondo et al. (2015)
Local status / compact grammar: F / DEP / 1
Local anchor: Endnote 4
Source-locked relation: Modern thermodynamics-of-information framework; grounds physical cost/constraint claim, not NMF layering.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r13
Part ID: PB32
Paper: P1
Source: Ruiz-Mirazo et al. (2004)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 8
Source-locked relation: Organisation-centred life comparator; present life threshold does not require autonomy plus open-ended evolution as a primitive discriminator.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r14
Part ID: PB34
Paper: P1
Source: Seifert (2012)
Local status / compact grammar: F / DEP / 1
Local anchor: Endnote 2
Source-locked relation: Standard nonequilibrium / stochastic-thermodynamic reference; NMF layer structure remains Paper 1 construction.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r15
Part ID: PB35
Paper: P1
Source: Shannon (1948)
Local status / compact grammar: F / DEP / 1
Local anchor: Endnote 3
Source-locked relation: Channel-relative mathematical framework for entropy, mutual information, alphabets, noise, and capacity used at the Shannon layer.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r16
Part ID: PB36
Paper: P1
Source: Sharma et al. (2023)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 12
Source-locked relation: Assembly Theory acknowledged as lower-ladder state-space / complex-chemistry adjacency, not evidence of NTC or Life.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r17
Part ID: PB40
Paper: P1
Source: Varela et al. (1974)
Local status / compact grammar: A3; C / SPEC / 0
Local anchor: Endnote 8
Source-locked relation: Autopoiesis comparator; present local threshold does not require autopoietic self-production as a primitive discriminator.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r18
Part ID: PB41
Paper: P1
Source: Woodward (2003)
Local status / compact grammar: F / DEP / 1
Local anchor: Endnote 5
Source-locked relation: Interventionist causal background. Baseline Dynamics is the stronger paper-specific comparator discipline.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r19
Part ID: PB15
Paper: P2
Source: Krakauer et al. (2020)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 1.5, note 1
Source-locked relation: Candidate-framing / individuality comparator; no inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r20
Part ID: PB20
Paper: P2
Source: Montévil & Mossio (2015)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 1.6, note 2
Source-locked relation: Maintained-interface / closure comparator; closure alone does not establish Attribution Locus or life-status.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r21
Part ID: PB38
Paper: P2
Source: Suárez & Stencel (2020)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 7.5, note 6
Source-locked relation: Part-dependent individuality comparator for symbiosis / mutualism and topology versus unity.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r22
Part ID: PB30
Paper: P2
Source: Rafiei & Asadi Anar (2026)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 1.6, note 2
Source-locked relation: Informational membrane boundary comparator; boundary account not inherited.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r23
Part ID: PB07
Paper: P2
Source: Doulcier et al. (2024)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 7.7, note 7
Source-locked relation: Higher-order identity / life-cycle-closure comparator; not Paper 2 death / branch-closure.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r24
Part ID: PB27
Paper: P2
Source: Pradeu (2016)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 1.5, note 1
Source-locked relation: Biological-individuality comparator; does not supply Attribution Locus or life discriminator.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r25
Part ID: PB09
Paper: P2
Source: Forterre (2011)
Local status / compact grammar: A3; C / REF / 0
Local anchor: heading 5.5, note 4
Source-locked relation: Close comparator to free-phase / host-completed attribution; Life-in-Potential not inherited from virocell.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r26
Part ID: PB18
Paper: P2
Source: Lennon & Jones (2011)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.3, note 3
Source-locked relation: Empirical dormancy support; intrinsic resumability is Paper 2 criterion.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r27
Part ID: PB02
Paper: P2
Source: Bernat et al. (1981)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.7, note 5
Source-locked relation: Death / organismal integration comparator; whole-brain criterion not inherited.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r28
Part ID: PB37
Paper: P2
Source: Shewmon (2001)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.7, note 5
Source-locked relation: Counterpressure on brain-centred somatic integration; Paper 2 branch-closure remains broader.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r29
Part ID: PB29
Paper: P2
Source: Queller & Strassmann (2009)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 7.7, note 7
Source-locked relation: Organismality comparator for higher-order locus; no dependency.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r30
Part ID: PB21
Paper: P2
Source: Moran & Sloan (2015)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 7.5, note 6
Source-locked relation: Critical pressure against automatic holobiont unity; comparator only.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r31
Part ID: PB23
Paper: P3
Source: Neveu et al. (2018)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.0, note 1
Source-locked relation: Staged life-detection methodological comparator; no technical dependence.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r32
Part ID: PB10
Paper: P3
Source: Green et al. (2021)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.0, note 1
Source-locked relation: Claim-strength / evidence-reporting comparator; does not supply attribution grammar.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r33
Part ID: PB24
Paper: P3
Source: Parenteau et al. (2025)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.0, note 1
Source-locked relation: False-positive / false-negative and biosignature-assessment comparator; no attribution dependence.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r34
Part ID: PB18
Paper: P3
Source: Lennon & Jones (2011)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.1, note 2
Source-locked relation: Empirical dormancy support; dormant-Life classification not inherited.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r35
Part ID: PB14
Paper: P3
Source: Jeffries et al. (2011)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.2, note 3
Source-locked relation: Empirical support for terminal active senescence exemplar; classification remains local.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r36
Part ID: PB09
Paper: P3
Source: Forterre (2011)
Local status / compact grammar: A3; C / REF / 0
Local anchor: headings 5.3 and 5.4, note 4
Source-locked relation: Virus/virocell comparator to free-phase / host-completed attribution; no ontology inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r37
Part ID: PB33
Paper: P3
Source: Salje (2021)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.5, note 5
Source-locked relation: Empirical support for obligate intracellular bacterial dependence without automatic loss of biological organisation.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r38
Part ID: PB31
Paper: P3
Source: Roger et al. (2017)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.6, note 6
Source-locked relation: Empirical mitochondrial integration/dependence basis; attribution remains locus/completion question.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r39
Part ID: PB19
Paper: P3
Source: Merlo et al. (2006)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.7, note 7
Source-locked relation: Empirical tumour cellular/population organisation; does not establish tumour-scale Attribution Locus.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r40
Part ID: PB22
Paper: P3
Source: Nasralla et al. (2018)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.8, note 8
Source-locked relation: Empirical organ preservation under external technical support; not evidence of organismal living locus.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r41
Part ID: PB13
Paper: P3
Source: Huh et al. (2010)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.8, note 8
Source-locked relation: Empirical organ-level function on chip; not evidence that the device-supported system is an organismal living locus.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r42
Part ID: PB26
Paper: P3
Source: Partridge et al. (2017)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.9, note 9
Source-locked relation: Empirical developmental support; developing organism remains the attributed locus.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r43
Part ID: PB28
Paper: P3
Source: Prusiner (1982)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.10, note 10
Source-locked relation: Empirical prion propagation contrast; primary class remains an attribution question.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r44
Part ID: PB06
Paper: P3
Source: Diener (1971)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.10, note 10
Source-locked relation: Empirical viroid RNA propagation contrast; primary class remains an attribution question.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r45
Part ID: PB39
Paper: P3
Source: Szostak et al. (2001)
Local status / compact grammar: A3; C / OVL / 0
Local anchor: heading 5.11, note 11
Source-locked relation: Synthetic-cell / protocell comparator for chemistry-to-life band; no life-discriminator inheritance.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t06-r46
Part ID: PB17
Paper: P3
Source: Latil et al. (2012)
Local status / compact grammar: E / N-A / 1
Local anchor: heading 5.12, note 12
Source-locked relation: Empirical post-mortem dormant stem-cell survival; supports constituent reframing after organismal closure.



6. Hold and exclusion branch-memory

The Part bibliography contains only admitted publications. Material candidates held or excluded at paper level remain control records rather than being promoted into the Part publication set. The following entries preserve the current branch-memory that is material to cross-paper consolidation.


TABLE got-v1-part-1-support-bibliography-and-relation-register-t07

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r01
Paper: P1
Candidate / family: Walker & Davies (2013), The Algorithmic Origins of Life
Current control state: Hold; A3; C / SPEC / 0; X6
Reason / update condition: Strong problem-level neighbour on information gaining causal efficacy in living systems, but top-down causation is central to the external proposal and is not required by Paper 1. Revisit only if hierarchical/top-down causation becomes locally load-bearing.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r02
Paper: P1
Candidate / family: Anderson & Piccinini (2024), The Physical Signature of Computation
Current control state: Hold; A3; C / OVL / 0; X3
Reason / update condition: Major contemporary physical-computation comparator, but Chalmers, Horsman, and the now-published Lizier provenance/comparator relation already cover the local implementation/triviality burden. Revisit if Paper 1 expands its general theory of physical computation.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r03
Paper: P1
Candidate / family: Solé et al. (2024), Fundamental constraints to the logic of living systems
Current control state: Hold; A2; A / ADJ / 0; X3
Reason / update condition: Broad thermodynamic/informational/computational constraint adjacency. Current Paper 1 already decomposes this neighbourhood through more specific admitted sources; revisit if universal living-system constraint families become a distinct claim.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r04
Paper: P1
Candidate / family: Terminology residual: Counterfactual Order Advantage; Information Processing Locus; Nested Multiscale Framework; Baseline Dynamics
Current control state: Residual; X5 where applicable
Reason / update condition: No material prior technical construct matching Counterfactual Order Advantage was identified in the targeted sweep. IPL, NMF, and Baseline Dynamics have generic/descriptive lexical neighbours but no verified relation sufficient for publication beyond the admitted bibliography. Preserve as terminology branch-memory; do not claim exhaustive uniqueness.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r05
Paper: P2
Candidate / family: Clegg (2001), cryptobiosis
Current control state: Hold; X3
Reason / update condition: Redundant for current text once Lennon & Jones represents dormancy. Revisit if cryptobiosis becomes load-bearing.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r06
Paper: P2
Candidate / family: DiFrisco (2018), biological process identity/persistence
Current control state: Hold; A2 / A-ADJ-0
Reason / update condition: Real adjacency but outside the minimum sufficient set. Revisit if a process-identity comparator becomes explicit.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r07
Paper: P2
Candidate / family: Moreira & López-García (2009), virus/life debate
Current control state: Hold; A2
Reason / update condition: Useful opposing literature but too binary for the present local relation. Revisit if the virus comparator is expanded.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r08
Paper: P2
Candidate / family: Kirchhoff et al. (2018), Markov blankets
Current control state: Exclude; X3 / X6
Reason / update condition: Formal/statistical boundary does not establish maintained informational boundary or Attribution Locus. Revisit only if a formal statistical-boundary apparatus is adopted.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r09
Paper: P2
Candidate / family: Gilbert, Sapp & Tauber (2012); Clarke (2010); West et al. (2015)
Current control state: Hold; X3
Reason / update condition: Redundant biological-individuality neighbourhood once the admitted comparator set is present.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r10
Paper: P2
Candidate / family: Hinrichs et al. (2026) preprint, Life as Plasmas
Current control state: Hold; A2; C / SPEC / 0; X6
Reason / update condition: Source identity and adjacency are now sufficiently verified to move beyond A0/X7. The work concerns physical admissibility/minimal-autonomy criteria and fits the life-threshold/autonomy neighbourhood more strongly than Paper 2 attribution architecture. Revisit only if those criteria become locally material to Attribution Locus or continuity.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r11
Paper: P3
Candidate / family: Catling et al., exoplanet biosignature Bayesian assessment
Current control state: Hold; A2 / X3 / X6
Reason / update condition: Relevant to probabilistic biosignature warrant but redundant locally once Neveu / Green / Parenteau represent the closer methodological neighbourhood.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r12
Paper: P3
Candidate / family: Yao, three-way decision theory
Current control state: Exclude; A1 / X5 / X6
Reason / update condition: Accept / reject / noncommitment is only a high-level resemblance. Paper 3 residual deferral is not a third class or generic decision region.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t07-r13
Paper: P3
Candidate / family: Paper 2 biological individuality / holobiont / organisational-closure comparator family
Current control state: Scoped hold; X6
Reason / update condition: Primary bibliographic home is Paper 2. Paper 3 inherits the attribution architecture and should not duplicate Paper 2 provenance merely because its exemplars apply it.



7. Part-level adjacency residual

This Part consolidation does not expand the discovery perimeter beyond the completed paper-level work. Paper 1 now carries a targeted audit upgrade against FD16, including the admitted Lizier et al. terminology/provenance comparator and Kolchinsky & Wolpert information-maintenance comparator, plus explicit hold/exclusion branch-memory. Paper 2 and Paper 3 carry their historical coded audits forward only where the 2026-08-12 posture/delta checks found no material change in relation, locator, or update condition.

Paper 3 retains the deliberate scope boundary that biological-individuality, holobiont, and organisational-closure comparators owned by Paper 2 are not duplicated merely because the procedure applies the inherited attribution architecture. The same ownership discipline applies upward: later-Part concepts are not imported into Part 1 to pre-install downstream architecture.

No further material adjacency is asserted by this document. Unsearched, inaccessible, held, excluded, or unrecognised adjacency remains residual. The Part bibliography should therefore be read as the current minimum-sufficient recoverable publication set, not as an exhaustive literature survey.

8. Series handoff and release control

This document is the first upward consolidation layer under GOT-SD-BIB-01. Its forty-three unique publications and forty-six paper-local admitted relations are now separable objects: bibliographic identity is deduplicated at Part level while each local relation remains controlled by the paper in which it was earned. No source is promoted to Indexed Inheritance by accumulation.


TABLE got-v1-part-1-support-bibliography-and-relation-register-t08

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r01
Release check: Paper-local recoverability
State: Pass
Control note: Each paper retains its own bibliography and endnotes; this Part document does not replace them.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r02
Release check: Bibliographic deduplication
State: Pass
Control note: Forty-six raw current-paper bibliography occurrences consolidate to forty-three unique Part records. The increase from the prior lock is exactly the two approved Paper 1 additions: Kolchinsky & Wolpert (2018) and Lizier et al. (2007).

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r03
Release check: Cross-paper relation preservation
State: Pass
Control note: Forterre, Lennon & Jones, and Montévil & Mossio retain distinct paper-local relations; no repeated publication is promoted by aggregation.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r04
Release check: Paper-level audit status
State: Pass
Control note: Paper 1 targeted audit metadata is now coded in this register; Paper 2 and Paper 3 historical codes were revalidated by current posture/delta checks with no reader-facing changes. No downstream concept was imported upstream.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r05
Release check: Hold/exclusion branch-memory
State: Pass
Control note: Material Paper 1, Paper 2, and Paper 3 holds/exclusions are carried forward without promotion; the Hinrichs Paper 2 candidate is updated to a verified A2 scoped hold rather than publication.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r06
Release check: Inheritance anti-drift
State: Pass
Control note: No publication is promoted by repetition. No new Indexed Inheritance is created at Part level.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r07
Release check: Adjacency residual
State: Pass
Control note: Discovery limits remain explicit; no exhaustiveness claim is made.

RECORD got-v1-part-1-support-bibliography-and-relation-register-t08-r08
Release check: Series handoff
State: Ready
Control note: Use this final source-locked Part bibliography, together with final SD-01-SD-03, as the Part 1 input to the later Series Master Bibliography and dependency/provenance controls.



Release rule: if any paper bibliography changes, update that paper first, then re-run Part-level deduplication and relation preservation before updating the Series Master Bibliography. A Part-level correction must never be used to silently overwrite the paper-local scholarly relation.